PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00067.1.g00550.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 495aa    MW: 54763.4 Da    PI: 7.7155
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00067.1.g00550.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS325.88.6e-100444871374
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlar.svselykalppsetseknsseela 79 
                                   l++lL++cA  v++g +e+a+ +L+++ +las d+   ++Rlaa+f+ ALa++l++ +v++l++al ++++s  +     a
  Zjn_sc00067.1.g00550.1.am.mk  44 LIKLLYDCAAQVAAGAFENANFYLEQITQLASLDApHVLHRLAAVFADALARKLLNqQVPGLSRALMSTANS-AEAHLIPA 123
                                   6899*******************************99****************9997999999999777776.34555557 PP

                          GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeel 158
                                   a++  +++ P++k+++lt+N+aI e ve+e+ vH++D++     ++QW+ L++++ sR +g+p+lRiT+v++    +ke l
  Zjn_sc00067.1.g00550.1.am.mk 124 ARQHMFHMLPFVKLAYLTTNRAIFETVEKERSVHVVDLSgpTADPVQWIMLFRSFYSRGGGAPQLRITAVHD----NKEFL 200
                                   778899********************************9556899***************************....99*** PP

                          GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll..................... 214
                                    +++  L+k Ae++g++f+fn+ v+ rl+dl+ ++L    +v+p+Eala+++v qlhrll                     
  Zjn_sc00067.1.g00550.1.am.mk 201 TNMAGTLTKEAEACGIRFQFNA-VEARLDDLDADALhhilNVRPDEALAISVVAQLHRLLavddangrrlggsscltpiqi 280
                                   **********************.799*****9999866668999************************************* PP

                          GRAS 215 .......................................desvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                                                                          + + s + +  ++L++vk lsPk+vvv+e ea+hn+++F er
  Zjn_sc00067.1.g00550.1.am.mk 281 iarssprsfgellerelntrlqlspdsssvlsslspqspAAQPSRSAKLARFLSAVKALSPKIVVVTEPEANHNATTFHER 361
                                   ************************************998444444445899****************************** PP

                          GRAS 257 flealeyysalfdsleak..lpres....eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
                                   f ea++yy+ lfd+le    + r++     er+ vEr +lg+ei+ vva egaer+erhe+l++W +r+e aG++ v ls+
  Zjn_sc00067.1.g00550.1.am.mk 362 FHEAVHYYALLFDCLERAsaVQRHHhgavAERARVERLVLGEEIRGVVALEGAERKERHERLAQWVRRMEGAGMERVGLSY 442
                                   ***************544224454478889*************************************************** PP

                          GRAS 332 kaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsvSaWr 374
                                   +++++a+  l+++++ +y+v ++   + l+++ +++pL+s+SaWr
  Zjn_sc00067.1.g00550.1.am.mk 443 NVTMEARKALQTCGWGEYEVTQDtrGQGLFFCFHRKPLYSISAWR 487
                                   **************777***9664477899**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.85818465IPR005202Transcription factor GRAS
PfamPF035143.0E-9744487IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MLQEDMASTA TSSPASSLYS PLPHGYGSGS WVQELTSDQQ SLRLIKLLYD CAAQVAAGAF  60
ENANFYLEQI TQLASLDAPH VLHRLAAVFA DALARKLLNQ QVPGLSRALM STANSAEAHL  120
IPAARQHMFH MLPFVKLAYL TTNRAIFETV EKERSVHVVD LSGPTADPVQ WIMLFRSFYS  180
RGGGAPQLRI TAVHDNKEFL TNMAGTLTKE AEACGIRFQF NAVEARLDDL DADALHHILN  240
VRPDEALAIS VVAQLHRLLA VDDANGRRLG GSSCLTPIQI IARSSPRSFG ELLERELNTR  300
LQLSPDSSSV LSSLSPQSPA AQPSRSAKLA RFLSAVKALS PKIVVVTEPE ANHNATTFHE  360
RFHEAVHYYA LLFDCLERAS AVQRHHHGAV AERARVERLV LGEEIRGVVA LEGAERKERH  420
ERLAQWVRRM EGAGMERVGL SYNVTMEARK ALQTCGWGEY EVTQDTRGQG LFFCFHRKPL  480
YSISAWRPAT CRLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-13331487224375GRAS family transcription factor containing p
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703080.10.0PREDICTED: scarecrow-like protein 3
TrEMBLK3Y6U20.0K3Y6U2_SETIT; Uncharacterized protein
STRINGSi009933m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-92scarecrow-like 3